Lead and/or participate in the development of computational approaches to aid in the design, assembly and analysis of DNA constructs, oligonucleotide pools and synthetic libraries.
Work closely with the platform group to provide interpretation of downstream data output and iteratively improve design software accordingly.
Maintain an accurate and detailed record of tools developed.
Ensure that developed tools have biologist-appropriate user interfaces and functionality.
Present technical and analytical status updates in weekly meetings.
Contribute to scientific research papers, reports and presentations.
Follow standard practices for executing version control, testing, and release.
Implement data-specific user interfaces and data retrieval reports.
Assist users to resolve tool malfunction or data entry errors.
Survey and provide feedback on existing and new third-party software that can be incorporated into our workflows.
A minimum of 5 years of related experience with a Bachelor's degree; or 3 years and a Master's degree in Computer Science, Bioinformatics, or related field; or equivalent work experience.
Experience writing software for molecular or synthetic biology applications.
Experience with web application frameworks (Tomcat/Django/Flask).
Experience with relational database structure and management (SQL, Postgres, MySQL).
Experience with HPC environments.
Experience with containers (Docker).
Experience with and adherence to software development best practices (version control, code review).
Proficiency with scripted programming languages (Python preferable) in a Unix environment.
Proficiency with object-orientated languages (JAVA preferable).
Demonstrated proficiency in utilizing assembled genomes, various alignment tools, visualization tools, and other genome interrogation and analysis software.
Analytical skills sufficient to troubleshoot discrepancies in data results and make improvement recommendations.
Strong organizational and record-keeping skills.
Effective oral and written communication skills as well as interpersonal skills.
Ability to work independently and as a team member in a diverse team environment.
Ability to handle multiple tasks in parallel while working on a large number of projects.
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